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da Messina: St. Jerome in his study
St. Jerome in his Study
Antonello da Messina
(Image from the National Gallery, London. Click for their site.)
  • CV
  • Papers and Projects
  • Software and Documentation


  • Resumé and Curriculum Vitae (CV)

    Resume of September 2007 [ PDF ] format.

    CV of September 2007 [ PDF ] format.


    Selected Papers and Data available for download

    All papers copyright © Charles R. Twardy, and other authors where applicable. Papers are provided for personal use only. Papers posted on this site are free of warranty and are not guaranteed to be the most recent versions. Consequently, please advise before citing. Most research has been supported in one way or another by grants, for which I am grateful. Granting agencies include the (U.S.) National Science Foundation, the Australian Research Council, Monash University, and Indiana University.

    Table of Contents

  • MML & Philosophy of Science
  • Teaching Critical Thinking
  • Bayesian Networks and Causation
  • Credibility Models
  • Bayesian Networks for Epidemiology
  • Psychology: Perception of Causation
  • Hume, Newton, and Maclaurin
  • Maya Cosmology and Philosophy of Science
  • Search & Rescue


  • MML and Philosophy of Science

  • Empirical data is algorithmically compressible: reply to McAllister, Studies in the History and Philosophy of Science, Part A), 36:2 391-402, June 2005. [ PDF |At SHPS ]
    Charles Twardy, Steve Gardner, David Dowe
    James McAllister's 2003 article, ``Algorithmic randomness in empirical data'' claims that empirical data sets are algorithmically random, and hence incompressible. We show that this claim is mistaken. We present theoretical arguments and empirical evidence for compressibility, and discuss the matter in the framework of Minimum Message Length (MML) inference, which shows that the theory which best compresses the data is the one with highest posterior probability, and the best explanation of the data.
  • Teaching Critical Thinking

  • Argument Maps Improve Critical Thinking Teaching Philosophy, 27:2, 95-116. June 2004 . [ PDF ]
    Computer-based argument mapping greatly enhances student critical thinking, more than tripling absolute gains made by other methods. I describe the method and my experience as an outsider. Argument mapping often showed precisely how students were erring (for example: confusing helping premises for separate reasons), making it much easier for them to fix their errors.
  • Bayesian Networks and Causation

  • The Metaphysics of Causal Models: Where's the Biff?. Erkenntnis 68:149-168. 2008. [ PDF | At Erkenntnis ]
    Toby Handfield, Charles R. Twardy, Kevin B. Korb, Graham Oppy
    This paper presents an attempt to integrate theories of causal processes---of the kind developed by Wesley Salmon and Phil Dowe---into a theory of causal models using Bayesian networks. We suggest that arcs in causal models must correspond to possible causal processes. Moreover, we suggest that when processes are rendered physically impossible by what occurs on distinct paths, the original model must be restricted by removing the relevant arc. These two techniques suffice to explain cases of late pre&eumlaut;mption and other cases that have proved problematic for causal models.
  • Causal Reasoning with Causal Models. Technical Report 2005/183, School of Computer Science and Software Engineering, Monash University. [ PDF ]
    K B Korb, C R Twardy, T Handfield and G Oppy
    We introduce and discuss the use of Bayesian networks for causal modeling. Despite their growing popularity and utility in this application, numerous objections to it have been raised. We address the claims that Chickering's arc reversal rule undermines a causal interpretation and that failures of Reichenbach's Common Cause Principle, or again failures of faithfulness, invalidate causal modeling. We also argue against Pearl's deterministic interpretation of causal models. Against these objections we propose new model-building principles which evade some of the difficulties, and we put forward a concept of causal faithfulness which holds when faithfulness simpliciter fails. Finally, we particularize our account of type causal relevant to token causal relevance, providing an alternative to the recent deterministic accounts of token causation due to Hitchcock and Halpern & Perl.
  • Token causation by probabilistic active paths (manuscript), January 2005 [ PDF ]
    Charles Twardy, Kevin Korb, Toby Handfield, Graham Oppy
    We present a probabilistic extension to active path analyses of token causation (Halpern & Pearl 2001, forthcoming; Hitchcock 2001). The extension uses the generalized notion of intervention presented in (Korb et al. 2004): we allow an intervention to set any probability distribution over the intervention variables, not just a single value. The resulting account can handle a wide range of examples. We do not claim the account is complete — only that it fills an obvious gap in previous active-path approaches. It still succumbs to recent counterexamples by Hiddleston (2005), because it does not explicitly consider causal processes. We claim three benefits: a detailed comparison of three active-path approaches, a probabilistic extension for each, and an algorithmic formulation.
  • A criterion of probabilistic causality, Philosophy of Science, July 2004 [ PDF ]
    Charles Twardy & Kevin Korb
    The investigation of probabilistic causality has been plagued by a variety of misconceptions and misunderstandings. One has been the thought that the aim of the probabilistic account of causality is the reduction of causal claims to probabilistic claims. Nancy Cartwright (1979) has clearly rebutted that idea. Another ill-conceived idea continues to haunt the debate, namely the idea that contextual unanimity can do the work of objective homogeneity. It cannot. We argue that only objective homogeneity in combination with a causal interpretation of Bayesian networks can provide the desired criterion of probabilistic causality.
  • Causation in Bayesian Networks (Slides: Sep. 2002) [ PDF ]
    Charles Twardy & Kevin Korb
    A quick introduction to Bayes nets and probabilistic causation, followed by an analysis of causal interaction. Based on the Causal Interaction papers and the more general papers and talks not yet posted here. I gave a version of this talk at AAHPSSS in Sydney in July, and this version at Indiana University in Bloomington in September 2002.
  • Causal Interaction (CSSE Tech Report 2002/118, July 2002) [ PostScript.Gzip (67k) |PostScript (582k) |PDF (119k) ]
    Charles Twardy & Kevin Korb
    For philosophers and computer scientists. Gives a general account of causal interaction using Bayes nets. Shows that noisy-OR and logit (two common models used in Bayes net research) are special cases. Shows that previous accounts in philosophy have been badly mistaken. Suggests a way to measure causal interaction. 11 double-column pages.
  • Measuring Causal Interaction (July 2002) [PDF (88k) |PostScript.Gzip (40k) |PostScript (100k) ]
    Charles Twardy & Kevin Korb
    For computer scientists mostly. A shortened version of TR 2002/118 (fewer examples, no philosophy), and more details about measuring the interactions. Some results. 8 single-column pages
  • Probabilistic Causal Interaction (November 2002) [PDF (274k) |PostScript.Gzip (51k) |PostScript (504k) ]
    Charles Twardy & Kevin Korb
    For philosophers mostly. A shortened version of TR 2002/118 (barest mention of noisy-OR and logit models), with a better discussion of Ellery Eells and the causal interaction debate in philosophy of science. Superseded by "A criterion for probabilistic causality" (above), Nov. 2003.
  • Bayesian Networks for Epidemiology

  • Epidemiological data mining of cardiovascular Bayesian networks. Electronic Journal of Health Informatics, 1:1 2006.
    [ Link ]Twardy, C. & Nicholson, A. & Korb, K. & McNeil, J.
    Although BNs have been used successfully for many medical diagnosis problems, there have been few applications to epidemiological data where data mining methods play a significant role. In this paper, we look at the application of BNs to epidemiological data, specifically assessment of risk for coronary heart disease (CHD). We build the BNs: (1) by knowledge engineering BNs from two epidemiological models of CHD in the literature; (2) by applying a causal BN learner. We evaluate these BNs using cross-validation. We compared performance in predicting CHD events over 10 years, measuring area under the ROC curve and Bayesian information reward. The knowledge engineered BNs performed as well as logistic regression, while being easier to interpret. These BNs will serve as the baseline in future efforts to extend BN technology to better handle epidemiological data, specifically to model CHD.
  • Bayesian networks for clinical decision support. Ch. 3 in Olivier Pourret, Patrick Naïm and Bruce G. Marcot (eds)Bayesian Belief Networks: A Practical Guide to Applications. John Wiley & Sons, March 2008. ISBN: 978-0-470-06030-8.
    Nicholson, A. E. & Twardy, C. R. & Korb, K. B. & Hope, L. R.
    Describes the cardiovascular models again and adds Luke Hope's work building a front-end application that uses those models.
  • Perception of Causation

    So far these are all based on experiments done for my dissertation. By far the best interpretation and analysis is provided in the paper to be published in Perception & Psychophysics. That paper omits the collision experiments: because of justified criticism from reviewers I plan to redo those.

  • Paper in Perception & Psychophysics 2002:64 (956-968). This is v.4.5. The accepted version (4.6) has some changes. [ PDF (384k) | PostScript.Gzip (179k) ]
    Charles Twardy & Geoff Bingham
  • Excel Dataset for the experiments in the Perception & Psychophysics paper. (Dissertation Exp. 1): [ Excel ]
  • Slides: Australasian Assoc'n of Phil. Conf. (2-7 July, 2000) [PDF (192K) ]
  • Dissertation: Causation, Causal Perception, & Conservation Laws (133 pages). Before final revisions. [ PDF (1.0M) ]
  • SPP 99 Paper (Presented as a poster at Stanford meeting, June 1999.) Journal style (dense, 6pp) [PostScript.Gzip (87k) ]
  • Hume, Newton, and Maclaurin

  • Paper read at the Hume Society 27th Annual Conference (24-29 July, 2000): [ PostScript.Gzip, 2up (8 pages, 78k) ]
  • October 2000 draft: [ PDF | LaTeX ]
  • Maya Cosmology and Philosophy of Science

  • Maya Cosmology and Philosophy of Science (long manuscript expanding on IJHL paper). [ HTML ]
    No, the Maya were not on the road to modern astronomy, so far as we can tell. The question is, what can we tell besides that? Can we evaluate and study scientific traditions which are not on our own branch of the intellectual phylogeny? Hopefully this paper has provided a clear analysis of various aspects of science which may be in mind when we ask whether Maya astronomy was scientific, and explored those features of Maya astronomy which have a bearing on the question.
  • Credibility Models

  • Credibility Models.
    Twardy, C.R. & Wright, E.J. & Cannon, S.J. & Takikawa, M.
    In K.B. Laskey & S.M. Mahoney & J. Goldsmith (eds) Proceedings of the Fifth UAI Bayesian Modeling Applications Workshop (UAI-AW 2007), Vancouver, British Columbia, Canada, July 19, 2007. CEUR Workshop Proceedings, v.268. [http://ceur-ws.org/Vol-268].
    We present a general hierarchical Bayesian model where Intelligence Sources make Reports about events or states in the world, which we call Hypotheses. The underlying multi-entity Bayes net for even a simple scenario has hundreds of nodes. We hide the details via Wigmore diagrams and a Google Maps GUI. Our application domain is Intelligence data fusion in asymmetrical warfare (terrorism). Some Hypotheses ­ like whether a village is a threat ­ may be abstract or unobservable. For these, we define Indicators ­ more observable Hypotheses whose value has some bearing on the target Hypothesis. The hierarchy can be arbitrarily deep, and Reports can provide evidence at any level. Furthermore, all Sources have credibility models. Traditional Sources are physical sensors with well-known error models. Non-traditional Sources include humans, websites, news, etc. For these Sources, our credibility models include Hypotheses about unknown factors like objectivity, competence, accuracy, reliabil- ity, and veracity. Every Report by a Source provides evidence about those factors. So, for example, successful ad hominem attacks against one Source can undermine his assur- ances that a village is safe, and lead us to believe it is hostile after all.
  • Search & Rescue (The SARBayes project)

    Please go to the SARBayes project homepage for papers, presentations, software, etc.

  • Australian lost-person database
  • Modeling lost person behavior with Bayesian networks
  • Managing searches using Bayesian networks
  • Optimal resource allocation
  • Diffusion and drift models of lost person behavior
  • Clues, scenarios, and probability maps
  • Software and Documentation



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    c t w a r d y _at_ alumni indiana edu

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    This page last modified Mar 19, 2008